Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVP----PYVEKALKKKFK
3OTW Chain:E ((10-162))
----IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKNVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPLISK-------
General information:
TITO was launched using:
RESULT:
Template:
3OTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102515 for 1148 contacts (-89.3/contact) +
2D Compatibility (PS) -16052 + (NN) -5802 + (LL) 1116
1D Compatibility (HY) -15200 + (ID) 3450
Total energy: -141903.0 ( -123.61 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_3OTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OTW-query.scw
PDB file :
Tito_Scwrl_3OTW.pdb
: