Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIKDAHFLTSSNNLSQCPA--------------SLTSEMVILGRSNVGKSTFINTLLGKNLAKSSATPGKTRLANFFSTTWEDKENALTTTFNVIDLPGFGYAKVSKSLKKEWEGFLWELLSVRVSIKLFIHLIDARHLDLEIDKNAKENIQALLR-----PDQAYLSLFTKFDKLNKNEQHRLFLNAPKPFLINTIHFNALSSKYPTLEIVRQTLLKYLLTNPL
1UDX Chain:A ((125-322))
-----NMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEV-----SEEERFTLADIPGIIEGASEG------KGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLR---KEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR---EGLAVLPVSALTGAGL----PALKEALHALVR
General information:
TITO was launched using:
RESULT:
Template:
1UDX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81086 for 1329 contacts (-61.0/contact) +
2D Compatibility (PS) -19352 + (NN) -8144 + (LL) 2664
1D Compatibility (HY) -2800 + (ID) 1500
Total energy: -110218.0 ( -82.93 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_1UDX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDX-query.scw
PDB file :
Tito_Scwrl_1UDX.pdb
: