Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
4Y96 Chain:B ((7-251))
-RKKFVAGNWK--MNTTLAEAKALGAAVAKGVTDDRVTVAVFPPYPWLTAVGEVLKGSPVALGAQDVSSEKKGAFTGEVSPAMLLETGCKYALIGHSERRHIIGESETFINHKVHTALEEGLSVVLCMGETLAERERGLQERVFQRQVYAACAGLTDEQFGRIVIAYEPVWAIGTGKVATPEQAQEAHAFVRSKLRLLYGDKIADSTPIVYGGSVTPDNTVGLMSQPDVDGALVGGASLKADSFLAIV--------
General information:
TITO was launched using:
RESULT:
Template:
4Y96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128393 for 2101 contacts (-61.1/contact) +
2D Compatibility (PS) -26679 + (NN) -10878 + (LL) 568
1D Compatibility (HY) -15600 + (ID) 3900
Total energy: -184882.0 ( -88.00 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_4Y96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y96-query.scw
PDB file :
Tito_Scwrl_4Y96.pdb
: