Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFN----MLAT--ASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
1VIM Chain:A ((11-198))
------HMSLLRFLEVVSEHIKNLRNHIDLETVGEMIKLIDSAR-SIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETV-----TPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLTEKDLEARHAVLEEG------
General information:
TITO was launched using:
RESULT:
Template:
1VIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119031 for 1388 contacts (-85.8/contact) +
2D Compatibility (PS) -19408 + (NN) -12488 + (LL) 1040
1D Compatibility (HY) -7600 + (ID) 1900
Total energy: -159387.0 ( -114.83 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1VIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIM-query.scw
PDB file :
Tito_Scwrl_1VIM.pdb
: