Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATT--HLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGN--RPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGD-IEANLEKLAKGVLTE
1RPX Chain:A ((11-229))
-IIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRP-
General information:
TITO was launched using:
RESULT:
Template:
1RPX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174121 for 1818 contacts (-95.8/contact) +
2D Compatibility (PS) -23727 + (NN) -16176 + (LL) 296
1D Compatibility (HY) -21600 + (ID) 4500
Total energy: -239828.0 ( -131.92 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_1RPX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RPX-query.scw
PDB file :
Tito_Scwrl_1RPX.pdb
: