Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLNFLYANMQKDIDSVEKELKKALSGAAADTTSAAALHLLEAGGKRIRPMFVCLSARLAANADFNAVKNASVAIELIHMASIVHDDVVDDADLRRGRETIKSKWGNHIAMYTGDFLFAKSLEYMTEIKDVAAHKMLSHVTVELSTGEIEQLKDKYNFDQSVRNYLRRIKRKTALLIAASCGLGGVVSGQSEADYQKLYRFGYYVGMAFQITDDVLDFVGTEKELGKPAGEDLRQGNVTLPVFFAMEDPFLK-KRISQI-T-EETPAEEIAVLVEEVKK-TGAKQAEDVATTYLKKAVEILDSLPQVPELKPLKQIVRVLDKRNY |
| 3LMD Chain:A ((33-348)) | ----ELTARINDAMVQVEELLHTELSS-GEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMD-----------NARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQMRETVGPRD-TDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFS--------PGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVKR-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LMD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116434 for 2325 contacts (-50.1/contact) +
2D Compatibility (PS) -31342 + (NN) -16239 + (LL) 1488
1D Compatibility (HY) -18400 + (ID) 4550
Total energy: -185477.0 ( -79.78 by residue)
QMean score : 0.504
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