Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LPNEVYDVTIIGGGPIGLFSAFYSGLRSMKTKIIDAE----PAVGGKVRYFFPEKIIRDIGGIP-AITGENLVANLKQQAETFHPTIVCSERVVDVTKLADGTFQLTSHNGSIHFSKTIVIATGSGTFEVNKLEALHAED----FP-FAIHYDVKN---IEQFRDKVVVVSGGGNSAIDWAQTLEPIAKKVHLIYRGEDFKAHEES-VRELKNSRVEIHIHHEISELIGTNNQ--LTEITVCCNQTQTTKTIETEALFINHGVKVDLGTMAEWGFKQAD-FGIVVDD-EMKTTVPGIFACGDSATYPRKIRIIAAGLHEGPIAINSAKKYLEPTAADEAMISTHHESFIG |
| 1VDC Chain:A ((4-324)) | LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD---VENFPGFPEGILGVELTDKFRKQSERFGTTI-FTETVTKVDFSS-KPFKLFTD-SKAILADAVILAIGA---VAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKY--RQAITAAGTGCMAALDAEHYLQE----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185483 for 2673 contacts (-69.4/contact) +
2D Compatibility (PS) -32517 + (NN) -7793 + (LL) 2120
1D Compatibility (HY) -10000 + (ID) 3750
Total energy: -237423.0 ( -88.82 by residue)
QMean score : 0.521
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