Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKKLILGLVMMMALFSLAACGGGGDVVKTDSGDVTKDELYDAMKDK----------------YGSEFVQQLTFEKILGDKY-----KVSDEDVDKKFNEYKSQYGD---QFSAVLTQSGLTEKSFKSQLKYNLLVQKATE----ANTDTSDKTLKKYYETWQP-DITVSHILVAD------------------------------------------------------------------------------------------------------------------------ENKAKEVEQKLKDG-EKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMDKPATK-TTFEKDKKAVKASYLESQLTTENMQKTLKKEYKDANVKVEDKDLKDAFKDFDGSSSSDSDSSK |
| 1M5Y Chain:A ((25-427)) | ----------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQV--TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLN-KGQMSAPVHSSFGWHLIELLDTRNVD--------RAYRMLMNRKFS-EEAASWMQEQRASAYVKILS---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10911 for 1354 contacts (8.1/contact) +
2D Compatibility (PS) -26254 + (NN) -16590 + (LL) 2972
1D Compatibility (HY) -14800 + (ID) 2650
Total energy: -46411.0 ( -34.28 by residue)
QMean score : 0.595
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