Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
1SW3 Chain:A ((4-246))
-RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSAD-TEVVCGAPSIYL-DFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWS--KVVLAYEPVWAIGTGKVATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKP-EFVDIINA--
General information:
TITO was launched using:
RESULT:
Template:
1SW3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89614 for 2082 contacts (-43.0/contact) +
2D Compatibility (PS) -26626 + (NN) -12913 + (LL) 1268
1D Compatibility (HY) -17200 + (ID) 5200
Total energy: -150285.0 ( -72.18 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1SW3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SW3-query.scw
PDB file :
Tito_Scwrl_1SW3.pdb
: