Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVSKVAIASDHGGIELRKSIISYLESVGISYEEFGPETPESVDYPRLAITVSEKVVNQEVDRGILVCGTGIGMSIAANKVKGIRCALVGDTFSAHATREHNDTNVLALGARVIGPGLAEDIVKIWLETEYEGGRHANRVGQITAYEDSHA
2VVR Chain:A ((1-147))
--MKKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQR--
General information:
TITO was launched using:
RESULT:
Template:
2VVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108130 for 1216 contacts (-88.9/contact) +
2D Compatibility (PS) -15780 + (NN) -5394 + (LL) 448
1D Compatibility (HY) -13200 + (ID) 3450
Total energy: -145506.0 ( -119.66 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2VVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVR-query.scw
PDB file :
Tito_Scwrl_2VVR.pdb
: