Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDMDDFDLIQRTNVRGTFVVSKQA--ALRVRNGGAIINFSTSVTRTSFPTYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTGKDDKTIDNLAKATPLERLGQPEDIAETVAFLAGPARWVNGQVIFT-NGGLA
3VZS Chain:C ((14-254))
---QRIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMTRADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQD-VLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGL-
General information:
TITO was launched using:
RESULT:
Template:
3VZS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119648 for 2008 contacts (-59.6/contact) +
2D Compatibility (PS) -25863 + (NN) -12342 + (LL) 388
1D Compatibility (HY) -12400 + (ID) 4050
Total energy: -173915.0 ( -86.61 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_3VZS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZS-query.scw
PDB file :
Tito_Scwrl_3VZS.pdb
: