Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHLPIKPKTKVAIVTCMDSRL--HVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQ-----RDLGVDMHGHDFLPFNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK---
1G5C Chain:A ((2-170))
---IIKDILRENQDFRF---RDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDDGVIRSAAVAIYALGDNEIIIVGHTDCGMARLDEDLIVSRMRELGVEEEVIENFSIDVLNPVGDEEENVIEGVKRLKSSPLIPESIGVHGLIIDINTGRLKPLYLDE
General information:
TITO was launched using:
RESULT:
Template:
1G5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92734 for 1106 contacts (-83.8/contact) +
2D Compatibility (PS) -17423 + (NN) -13436 + (LL) 360
1D Compatibility (HY) -14800 + (ID) 2750
Total energy: -140783.0 ( -127.29 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1G5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5C-query.scw
PDB file :
Tito_Scwrl_1G5C.pdb
: