Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRHEHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYLEKLNLGEVHYLKPVE
1CBK Chain:A ((1-160))
MITAYIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENEQGRVRLRRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREFVIVPLFEIASDLVLPNSQIITELVKQFADHKMIKLNP--
General information:
TITO was launched using:
RESULT:
Template:
1CBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130001 for 1246 contacts (-104.3/contact) +
2D Compatibility (PS) -16912 + (NN) -6357 + (LL) 296
1D Compatibility (HY) -15600 + (ID) 3200
Total energy: -171774.0 ( -137.86 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_1CBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CBK-query.scw
PDB file :
Tito_Scwrl_1CBK.pdb
: