Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKG-IEISNLLPEQRMQERGW
4ADU Chain:B ((12-283))
--------LKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNFNNPKILLNVSLGLGKAMHGNTK---------------
General information:
TITO was launched using:
RESULT:
Template:
4ADU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159825 for 2411 contacts (-66.3/contact) +
2D Compatibility (PS) -30102 + (NN) -19136 + (LL) 1756
1D Compatibility (HY) -28800 + (ID) 7850
Total energy: -243957.0 ( -101.18 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_4ADU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ADU-query.scw
PDB file :
Tito_Scwrl_4ADU.pdb
: