Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKRRKICYCNTALLLMILLAGCTDSKDGEAQQPSNQASAVQTDEKHTEPEESTKIRKDEAEPIT----ESEESATKAANDTSSAEEKSKED--NVLAAYSSEKIEY------------ARVWLQLGPN----------QEIDELNVRHIAAGEPINPNDDTSASYPENVT---QLAGSRLVDGSVTYHGNGDGTIHVY-----NVPLRWDSADDIEKGVMREV-TESIIKNRKTVYVDTGDDEKIKRLIDIMMIH-------------------------------------------------------------------
4RKS Chain:A ((21-337))--TYRSIGSTAYPTIGVVLLGGIANPVTR---TPLHTSAGIAYSDSCGSIRSETRIYADEATHIYFNGTESTDDNRSVRRVLDRYSSVFEEAFGTKTVSYSSQNFGILSGSSDAGAASIGAAILGLKPDLDPHDVENDLRAVSESAGRSLFGGLTITWSDGFH-AYTEKILDPEAFSGYSIVAFAFDYQRNPSDVIHQNIVRSDLYPARKKHADEHAHMIKEYAKTNDIKGIFDLAQEDTEEYHSILRGVGVNVIRENMQKLISYLKLIRKDYWNAYIVTGGSNVYVAVESENADRLFSIENTFGSKKKMLRIVGGAWHRRPE


General information:
TITO was launched using:
RESULT:

Template: 4RKS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 915 -20372 -22.26 -95.64
target 2D structure prediction score : 0.40
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -22.26
2D Compatibility (Sec. Struct. Predict.) : 0.40
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.099

(partial model without unconserved sides chains):
PDB file : Tito_4RKS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4RKS-query.scw
PDB file : Tito_Scwrl_4RKS.pdb: