Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPEGKIIKALSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQ-DTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRKPRY
4M8N Chain:E ((70-170))---------------------------------------------------------------------MRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQW--NNCAFLESSAKSKINVNEIFYDLVRQINS----------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4M8N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain E - contact count / total energy / energy per contact / energy per residue : 362 -51542 -142.38 -536.89
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain E : 0.60

3D Compatibility (PKB) : -142.38
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.60
QMean score : 0.550

(partial model without unconserved sides chains):
PDB file : Tito_4M8N.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4M8N-query.scw
PDB file : Tito_Scwrl_4M8N.pdb: