Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNNGRMLGVIGGSGFYTFFGS-DTRTVNSDTPYGQPSAPITIGTIGVHDVAFLPRHGAHHQYSAHAVPYRANMWALRALGVRRVFGPCAVGSLDPELEPGAVVVPDQLVDRTSGRADTYFDF-----GG-VHAAFADPYCPTLRAAVTG-----LPGVVDGGTMVVIQGPRFSTRAESQWFAAAGCNLVNMTGYPEAVLARELELCYAAIALVTDVDAGVAAGDGVKAADVFAAFGENIELLKRLVRAAIDRVADERTCTHCQHHAGVPLPFELP
1CB0 Chain:A ((9-261))
----AVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCW-----AVSVDRVLKTLKENANKAKSLLLTTIPQIGST-------------------
General information:
TITO was launched using:
RESULT:
Template:
1CB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164679 for 2012 contacts (-81.8/contact) +
2D Compatibility (PS) -25812 + (NN) -14461 + (LL) 1224
1D Compatibility (HY) -17200 + (ID) 4500
Total energy: -225428.0 ( -112.04 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1CB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CB0-query.scw
PDB file :
Tito_Scwrl_1CB0.pdb
: