Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSADLTAHARIREAAIEQFGRHGFG-VGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALKS-NDPTTWLA----QMAEIESYAPLMAYLVRSMQSGGE----LAKMLWQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQMHENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
4JYK Chain:A ((16-211))
----VSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAP-IDPQHLIFMIWASTQHYADFAPQVEAVTGA-TLRDEVFFNQTVENVQRIIIEGIRP--------------------
General information:
TITO was launched using:
RESULT:
Template:
4JYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66082 for 1273 contacts (-51.9/contact) +
2D Compatibility (PS) -20645 + (NN) -11577 + (LL) 2368
1D Compatibility (HY) -6000 + (ID) 1750
Total energy: -103686.0 ( -81.45 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_4JYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JYK-query.scw
PDB file :
Tito_Scwrl_4JYK.pdb
: