Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF
1NGK Chain:A ((3-128))
--KSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF
General information:
TITO was launched using:
RESULT:
Template:
1NGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69645 for 858 contacts (-81.2/contact) +
2D Compatibility (PS) -14109 + (NN) -13088 + (LL) 68
1D Compatibility (HY) -16800 + (ID) 6300
Total energy: -119874.0 ( -139.71 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1NGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NGK-query.scw
PDB file :
Tito_Scwrl_1NGK.pdb
: