Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSRTWIRNPLAIFTAN-GLDAAGGLVVEDGRIVELLGAGQQPAQPCASQFDASRHVVLPGLVNTHHHFYQTLTRAWAPVVNQPLFPWLKTL-YPVWARLTPEKLELATKVALAELLLSGCTTAADHHYLFPGGLEQAIDVQAGVVEELGMRAMLTRGSMSLGEKDGGLPPQQTVQEAETILADSERLIARYHQRGDGARVQIALAPCSPFSVTPEIMRASAEVAARHDVRLHTHLAETLDEEDFCLQRFGLRTVDYLDSVGWLGPRTWLAHGIHFNAEEIRRLGEAGTGICHCPSSNMRLASGICPTVELEAAGAPIGLGVDGSASNDASNMILEARQALYLQRLRYGAERITPELALGWATRGSARLLGRSDIGELAPGKQADLALFKLDELRFSGSHDPLSALLLCAADRADRVMVGGAWRVVDGAVEGLDLAALIARHRAAASALIAG |
1P1M Chain:A ((1-404)) | ---MIIGNCL-ILKDFSSEPFWGAVEIENGTIKRVLQGE------VKVDLDLSGKLVMPALFNTHTHAPMTLLRGVAE--DLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFH-E-------EWIAKAVRDFGMRALLTRGLVDSNG------D------DGGRLEENLKLYNEWNG--FEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEE-YD--------LEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQN-PRNLDVNTCLKMVTYDGAQAMGFK-SGKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAFSGEVFATMVAGKWIYFDGEYPTIDSEEVKRELARIEKELY-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1P1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230932 for 3707 contacts (-62.3/contact) +
2D Compatibility (PS) -42592 + (NN) -15969 + (LL) 2216
1D Compatibility (HY) -20800 + (ID) 5250
Total energy: -313327.0 ( -84.52 by residue)
QMean score : 0.544
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