Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDYQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFEN---ARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGAFDDPRLNLVIDDGMRFV-ATTEERFDVIISDSTDPIGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTA--ARTDGLFADWHFYQAAVPTYIGGAMTFAWGSTHEGLR-RLPLETLRQRFRDSGIAT--RYYNADIHLGAFALPQYVLQAIGKQDND
4YV1 Chain:B ((27-296))
--------WPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR-SLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLF--AFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETG-FASVQYALMHVPTYPCGSIGTLVCSKKAGVDVTKPLRPV----EDMPFAKDLKYYDSEMHKASFALPRFARHINN-----
General information:
TITO was launched using:
RESULT:
Template:
4YV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158088 for 2237 contacts (-70.7/contact) +
2D Compatibility (PS) -27837 + (NN) -12912 + (LL) 2016
1D Compatibility (HY) -24400 + (ID) 5200
Total energy: -226421.0 ( -101.22 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_4YV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YV1-query.scw
PDB file :
Tito_Scwrl_4YV1.pdb
: