Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALKDA----GVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
4JLD Chain:A ((1-178))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNV---IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4JLD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73080 for 1282 contacts (-57.0/contact) +
2D Compatibility (PS) -18870 + (NN) -8180 + (LL) 2424
1D Compatibility (HY) -18000 + (ID) 4450
Total energy: -120156.0 ( -93.73 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4JLD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLD-query.scw
PDB file :
Tito_Scwrl_4JLD.pdb
: