Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------------MSQANELLIGAGPDGQPVGQAWRLANRHGLIAGATGTGKTVT------LQHLAESFSDAGVAVFAADIKGDLCGIAAPGNPQGKVAERIASMPWLNYQPKAYPTTLWDIAGKTGHPLRTTISEMGPLLLANLLELTDSQQAALFAAFQVADRE--------------GLLLLDLKDLKALLNHLKD-NPEILGEDRALFT-------------GASGQALLRRLAT------------LEQQGAEAFFGEPALQLEDILRPEP-----DGRGRIHLLDASRLVHEAPKVYA---------------------TFLLW---LLAELFEQLPERGDADKPV----------LALFFDEAHLLFN-GTPKALRDRLEQVV------RLIRSKGVGVYF--------------------VTQSPGDLPD-----------------DVLAQLGLRIQHGLRAFTAKEQKSLRAVADGFRPNPAFDTLGVLTE-------LGIGEALVGTLE---EKGTPAMVQRVAVAPPYSRIGPLSDSERAELVQRSPLKGRYDQPIDRESAYEVLANK-------------AGAKPEVQGQATAQQESSSG-----VGGMAGQILGSLLSNSTVKSAMRQAANQLSR-----ELVRGLLGSLMGGKKRR |
| 4KVM Chain:A ((5-731)) | QLSPKEITLFRTALKCYETKQYKKGLKAIEPLLERHPEHGESLAIKGILLHSLGNTKEGYDNVRLGLRNDVGSGVCWHIFGLISRADKDYVQAAKCYINAHKLEKNNSSLLRDLALLQSQLRQYKALADTRNALLQDN-PGVRANWSALAVAQFLRGEYASAYKIVDAFESTINQGVPV-DTQEESEAMLFMNLVILKKDGVEDAYKHLLSIEKKVLDRVAFLETRAEYELYLSKMEEAKSTIYLLLDRNPDNHQYYYNLQRAYGYEDASGKVLDSAEWLNLYSQLAKRYPKSECPTRLPLEKLEGDEFLTHVDLYLRKKLKRGIPSVFVDVKSLYKDTKKCKVVEDLVSKYASSLSTTNKFSEDDDNSQIEIPTTLLWTYYFLAQHFDHVGELEKAEKYVDLAIDHTPTLVELFMTKARISKHKGELQTAMEIMDHARKLDLQDRFINGKCAKYMLRNDENELAAKTVSLFTRNEAVGGAVGDLADMQCLWYMLEDGKSFARQKKFALALKRFSTVFKIFDTWADDQFDFHFFAFRKGSLRTYLDLMSWEDSVYDDPSFREAAQGSIEIYFALFDLPFAKYSPKLPDFEKLSSGEINEEEEKKIYKKLKKDLSKRLERAEKLKEADKSRKYDEDPLGENLVATSEPLKEAQKCLEKLLPYGDKNPSAYILAAQLYTRLKNFDTASKYLEQAKVILGQNDPTVISTEKFYNSIKTQSNAA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4KVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -31667 for 3299 contacts (-9.6/contact) +
2D Compatibility (PS) -52285 + (NN) -18752 + (LL) 244
1D Compatibility (HY) -10400 + (ID) 4900
Total energy: -117760.0 ( -35.70 by residue)
QMean score : 0.222
|
|
|