Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKA-AVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGKRTVLEMTGLLTNLSDQDLADIAAYFASQKMSVGM--ADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIA--TAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQS----IAAKLSNKDIAAISSYIQGLH
3VRD Chain:A ((1-174))
------------------------EPTAEMLANNCAGCHGTRGNSAGPASPSIAQMDPAVFVEVMEQFKSGEIQSTIMGRIAKGYSTADFQKMAEYFKQQTYQPVKQSFDKALVAKGTKLHD--------KYCEKCHVESGKPLADQD-EYHILAGQWTPYLRYAIEDFRAERRPM---EKKMASKLKELLKAEGEDGLDALFAFYASQQ
General information:
TITO was launched using:
RESULT:
Template:
3VRD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42215 for 1202 contacts (-35.1/contact) +
2D Compatibility (PS) -18275 + (NN) -13294 + (LL) 1924
1D Compatibility (HY) -8800 + (ID) 2200
Total energy: -82860.0 ( -68.94 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_3VRD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VRD-query.scw
PDB file :
Tito_Scwrl_3VRD.pdb
: