Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVNMSFNCGIVGLPNIGKSTLFNALTQSSAAEAANYPFCTIEPNIGKVPIRDQRLRQIAAIAGSEKVIYNQLEVVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHLLRCFMDDGVNHVHNEIDPISDAEVVEMELILADIDSIEKRLPQLEKKAKQGNKELKRQLDLMHEVLATLKLGKPARSLECSDRNEMKSLQLLTAKPVMYVCNVEDINIITGNKLSQKVKKIAEENKNKFYCISAKLESDIANLESEEEKQSFLSEFGLQESGLDGVARIMYEVLSMITFFTVGLKEARAWPIKIGSTADKAAGVIHNDFEKGFIKAETISFADYVKYRSESACKDAGKIRFEGKDYIVQDGDIMHFRFNV |
| 1UDX Chain:A ((156-316)) | ---LIADVGLVGYPNAGKSSLLAAMTR-AHPKIAPYPFTTLSPNLGVVEVSEE----------------ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEP-----------LKTLETLRKEVGAY----------------------------------------D----------------PALLRRPSLVALNKVDLLEEEA---VKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPKPVPQAGVEVVPVAEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALRAKGVRAGDLVRIGGLEFEYIPEV-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UDX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77685 for 1240 contacts (-62.6/contact) +
2D Compatibility (PS) -17091 + (NN) -1153 + (LL) 7616
1D Compatibility (HY) -8000 + (ID) 2200
Total energy: -98513.0 ( -79.45 by residue)
QMean score : 0.383
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