Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSRKQSIQKTQLSKTKKQTLNVTIDRPIGYTDKFGNVYPLNYGFVEGVIGGDGEEQDVYVLSRKISEPIDTFQGDLIAVITRNDD--VEDKWVVAAPNE--N----------FTIEEIREKVHFIEQYFDSEIKLI
3D53 Chain:A ((36-145))
------------------ESGALFVDRFMQ----TTMSYPCNYGFIPDTLSNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDL-----
General information:
TITO was launched using:
RESULT:
Template:
3D53.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28341 for 515 contacts (-55.0/contact) +
2D Compatibility (PS) -10350 + (NN) -3736 + (LL) 2464
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -46763.0 ( -90.80 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_3D53.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D53-query.scw
PDB file :
Tito_Scwrl_3D53.pdb
: