Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIWDAYDQYGFITGLTLNRDQNIPQGLFHLVVDVILFHEDGDVLMMKRHPKKKAFPAYFEATAGGSALKGENAKQAILRELKEETGIVPQCLTFLNREWFSERSYFVDHFIAKYNGAKDIITLQEGETVDYIWLKPEYIDLFLSKNKLIPSQIKLLKSLI
1VK6 Chain:A ((137-253))
--------------------------PQIAPCIIVAIRR-DDSILLAQHTRH---RNGVHTVL-AGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEY--DSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMC
General information:
TITO was launched using:
RESULT:
Template:
1VK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66859 for 809 contacts (-82.6/contact) +
2D Compatibility (PS) -12771 + (NN) -5368 + (LL) 1852
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: -88646.0 ( -109.57 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_1VK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK6-query.scw
PDB file :
Tito_Scwrl_1VK6.pdb
: