Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
4DSU Chain:A ((3-181))
-TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ---SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSK-DGKKKKKK--------
General information:
TITO was launched using:
RESULT:
Template:
4DSU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88093 for 1377 contacts (-64.0/contact) +
2D Compatibility (PS) -20097 + (NN) -13342 + (LL) 1064
1D Compatibility (HY) -21200 + (ID) 7600
Total energy: -149268.0 ( -108.40 by residue)
QMean score : 0.747
(partial model without unconserved sides chains):
PDB file :
Tito_4DSU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DSU-query.scw
PDB file :
Tito_Scwrl_4DSU.pdb
: