Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAV-CQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEA-P--KGAHYLSKSLDDALALLDSP-ELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILH-----EFESDTFFPEID-YKDFKL----LTEY--PGV--PAD--------------IQEEDGIQYKFEVYQKSVLAQ
3CSE Chain:A ((3-218))
KVPVVGIVAALLPEMGIGFQGNLPWR-LAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSM--DLADHWLITKIMPLPETTIPQMDTFLQKQELEQRFYDNSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKKL---
General information:
TITO was launched using:
RESULT:
Template:
3CSE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94484 for 1323 contacts (-71.4/contact) +
2D Compatibility (PS) -19492 + (NN) -4967 + (LL) 468
1D Compatibility (HY) -16400 + (ID) 3350
Total energy: -138225.0 ( -104.48 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_3CSE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CSE-query.scw
PDB file :
Tito_Scwrl_3CSE.pdb
: