Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE
2PBC Chain:A ((1-97))
----------GSPIK-SRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIE
General information:
TITO was launched using:
RESULT:
Template:
2PBC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43593 for 677 contacts (-64.4/contact) +
2D Compatibility (PS) -10226 + (NN) -1282 + (LL) 864
1D Compatibility (HY) -8000 + (ID) 2300
Total energy: -64537.0 ( -95.33 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_2PBC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBC-query.scw
PDB file :
Tito_Scwrl_2PBC.pdb
: