Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDLPPQLSFGLYVAAFALGFPLNVLAIRGATAHARLRLTPSLVYALNLGCSDLLLTV-SLPLKAVEALASGAWPLPASLCPVFAVAHFFPLYAGGGFLAALSAGRYLGAAFPLGYQAFRRPCYSWGVCAAIWALVLCHLGLVFGLEAPGGWLDHSNTSLGINTPVNGSPVCLEAWDPAS----AGPARFSLSLLLFFLPLAITAFCYVGCLRALARSGL----------THRRKLRAAWVAGGALLTLLLCVGPYNASNVASFLYPNL-----GGSWRKLGLITGAWSVVLNPLVTGYLGRGP--GLKTVCAARTQGGKSQK |
| 2KS9 Chain:A ((33-324)) | -----VLWAAAYTVIVVTSVVGNVVVMWIILAHKRMR-TVTNYFLVNLAFAEASMAAFNTVVNFTY-AVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRL--SATATKVVICVIWVLALLLAFPQGYYSTTE--------------TMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDY |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165754 for 2108 contacts (-78.6/contact) +
2D Compatibility (PS) -27387 + (NN) -9228 + (LL) 804
1D Compatibility (HY) -17600 + (ID) 2350
Total energy: -221515.0 ( -105.08 by residue)
QMean score : 0.257
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