Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFNISDIIKILPHSYPFLLVDRVIECDPSKSIKAIKNVTFNEPFFIGHFPNHPIMPGVLIVESLAQAS---AICILGKGSKSTMENKVVYLMSIENAKFRKPVTPGDTLILQADFKNARLSVCKFECFAYVGEEKVAEATILAMLQNI
3D04 Chain:E ((11-155))
-QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAER
General information:
TITO was launched using:
RESULT:
Template:
3D04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117077 for 1045 contacts (-112.0/contact) +
2D Compatibility (PS) -15275 + (NN) -3940 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3300
Total energy: -154184.0 ( -147.54 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_3D04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D04-query.scw
PDB file :
Tito_Scwrl_3D04.pdb
: