Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRGDFAFKIIKQSNSARAGTIKTPSGNIETPAFIFCATRAAIKAADIERISEAGTQIILSNTYHLMLQPGENTVAKLGGLRKMMGWNGPMLTDSGGYQIFSLGHGSVSEEIKGIRKKQKTLIKIDEDGAIFRSYINGKAYCLTPERSIQIQQKLGADLILVLDECTPFHVSKEYTRRSMLMSHKWAERSLNEFG--KDDNGKQALYGISQGGVYRDLRRESCYFINNLPFFGQAIGG-SLGRSKEQMYDVVSFTMEHLKKDRPTHLLGIGRIVDIFYAVEAGIDTFDCVHPTRLARHGGALIKVKNRNTISSRYKEHINLRNQQFELDGNPIEGDCLCFTCRKYSRAYIHHLLKTKELLAYTLITIHNVFFMNKLMKSIRQAILDDRLDQEKSNWVGEV |
1OZQ Chain:A ((11-372)) | -RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSL----------------SSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFT-----------WDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARY |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1OZQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -199675 for 3241 contacts (-61.6/contact) +
2D Compatibility (PS) -38210 + (NN) -10850 + (LL) 1460
1D Compatibility (HY) -28000 + (ID) 8000
Total energy: -283275.0 ( -87.40 by residue)
QMean score : 0.541
|
|
|