Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNPNLSFYCNECERFESFLKNHYLHLEGFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCSLVGKKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAILRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNSLLESRIIVELVKILSA--NGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIND-EELLKWLQAFGLKMGLCFQVLDDIIDVTQDEKESGKTTHLDSAKNSFVNLLGLKKASGYAQTLKTEILNDLNALEPTYLSLQENLNALLNTLFKGKT |
3LLW Chain:A ((4-302)) | -SSPNLSFYYNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGI--KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASG-IKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQ-------------AKNSFVNLLGLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LLW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195448 for 2236 contacts (-87.4/contact) +
2D Compatibility (PS) -30339 + (NN) -15548 + (LL) 668
1D Compatibility (HY) -44000 + (ID) 12900
Total energy: -297567.0 ( -133.08 by residue)
QMean score : 0.540
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