Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKQAILNNIHQTWQEEANAISRLPEV-TSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
1JEO Chain:A ((8-178))
-----------DIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAK-KIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETT-----TPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECG-NVVEFADLTIPLEVKKSK-YLP-MGTTFEETALIFLDLVIAEIMKRLNLDESEIIKRHCN----------
General information:
TITO was launched using:
RESULT:
Template:
1JEO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123811 for 1343 contacts (-92.2/contact) +
2D Compatibility (PS) -18382 + (NN) -13009 + (LL) 1400
1D Compatibility (HY) -10800 + (ID) 1650
Total energy: -166252.0 ( -123.79 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1JEO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JEO-query.scw
PDB file :
Tito_Scwrl_1JEO.pdb
: