Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDRAKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKAGKLSGLAHCIAFANKDFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVENYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEERAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF
4D41 Chain:C ((29-281))
---NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAH--LYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKL--MPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAI--
General information:
TITO was launched using:
RESULT:
Template:
4D41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180719 for 2198 contacts (-82.2/contact) +
2D Compatibility (PS) -27561 + (NN) -8469 + (LL) 612
1D Compatibility (HY) -24400 + (ID) 6850
Total energy: -247387.0 ( -112.55 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_4D41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D41-query.scw
PDB file :
Tito_Scwrl_4D41.pdb
: