Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------VHNPNLFNTLKQNEY-TLPKDPNTSNEIIDTMLSYLSSTDSELRDNIAYNIFSEWLVVQDNLTTEQKMRIYNYAVNKNNLLFKINIIDSDAVFQRSFLALIIALLLE-------------NNKVHNFLTDSE----IRETLNLLIELLKN-----EKNTHSFIEE--------KGWAHCIAHTADALDELIYQ-RTISEIDVKKIM--------TTIAFFYKTNTKMLTGEEDERLSNILITALFEQKIS-----------------NEEVKNWLISISETIPSYLPEIPLINIK----QFTQTLLIKLTVLNYDVDFSLFPIVTRYIRKNDDNSTNKKAL----------- |
| 3FGA Chain:B ((1-403)) | PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE-----SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61342 for 1698 contacts (-36.1/contact) +
2D Compatibility (PS) -28490 + (NN) -9426 + (LL) 332
1D Compatibility (HY) -13200 + (ID) 2300
Total energy: -114426.0 ( -67.39 by residue)
QMean score : 0.287
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