Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTKLKKVMISVIAATLLLLAGCGSSAVIKTDAGSVTQDELYEAMKTTYGNEVVQQLTFKKILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLSSNNLTKTSFKENLEYNLLVQKATEANMDVSESKLKAYYKTWE------------PDITVRHILVDDEA----------------------TAKEIQTKLKNG-EKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANIDIKDSDLKDAFADYTSTSSTSSTTTSN |
| 1YW5 Chain:A ((11-177)) | --------------------------------------------------------------------------------------NWTIRVSRSH-NKEYFLNQSTNESSWDPP-----YGTDKEVLNAYIAKFKNNGYKPLVNEDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTESDCS-SHDRGGDLGFFSKGQMQPPFEEAAFNLH-VGEVSNIIETNSGVHILQRTG-------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YW5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11298 for 911 contacts (-12.4/contact) +
2D Compatibility (PS) -14245 + (NN) -5461 + (LL) 12120
1D Compatibility (HY) -5200 + (ID) 1500
Total energy: -25584.0 ( -28.08 by residue)
QMean score : 0.420
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