Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4JLD Chain:A ((3-203))
--LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH---GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG--
General information:
TITO was launched using:
RESULT:
Template:
4JLD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54300 for 1538 contacts (-35.3/contact) +
2D Compatibility (PS) -21837 + (NN) -13475 + (LL) 576
1D Compatibility (HY) -18400 + (ID) 4150
Total energy: -111586.0 ( -72.55 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_4JLD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLD-query.scw
PDB file :
Tito_Scwrl_4JLD.pdb
: