Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKIRLSKFIKMIVVILFLISVAASFYFFHVAQVRDDKSFISNGQRKPGNSLYAYDKSFDKLLKQKIEMTNQNIKQVAWYVPAAKKTHKTAVVVHGFANSK--ENMKAYGWLFHKLGYNVLMPDNIAHGESHGQLIGYGWND-RENIIKWTEMIVDKNPSSQITLFGVSMGGATVMMASGEKLPSQVVNIIEDCGYSSVWDELKF--QAKEMYGLPAFPLLYEVSTISKIRAGFSYG--QASSVEQLKKNNLPALFIHGDKDNFVPTSMVYDNYKATAGKKELYIVKGAKHAKSFETEPEKYEKRISSFLKKYEK- |
2WTM Chain:A ((2-251)) | ------------------------------------GAMYIDCD---------------GIKLNAYLDMPKNN-----------PEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAME-RDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQ-YKNCKLVTIPGDTH--CYDHHLELVTEAVKEFMLEQIAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WTM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44021 for 2096 contacts (-21.0/contact) +
2D Compatibility (PS) -25889 + (NN) -8215 + (LL) 6776
1D Compatibility (HY) -6800 + (ID) 2150
Total energy: -80299.0 ( -38.31 by residue)
QMean score : 0.406
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