Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAVV--EIGDDRGR-IDLVNPEILEKSGE-QTGIEGCLSFPNVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDHLDGVLFTSKISKYYTEDELADMEG
4DR8 Chain:C ((28-179))------------VLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDKKG


General information:
TITO was launched using:
RESULT:

Template: 4DR8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 644 -61361 -95.28 -414.60
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain C : 0.81

3D Compatibility (PKB) : -95.28
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.438

(partial model without unconserved sides chains):
PDB file : Tito_4DR8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4DR8-query.scw
PDB file : Tito_Scwrl_4DR8.pdb: