Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKAKFQRTKPHVNIGTIGHVDHGKTTL-------TAAITKVLHDKFPDLNETKAFD---QIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVGVPYILVALNKADAVD-DEELLELVEMEVRELLAAQEFDEDAPVVRVSALKA----LEGDAKWVASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTT------KTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV---TKPGTTTPHTE-FEGQVYILSKDEGGR--HTPFFNNYRPQFYFRTTDVTGVV------TLPEGTEMVMPGDNTNISVKLIQPVAMD------EGLRFAIREGGRTVGAGRVTKIIK |
3WY9 Chain:B ((5-426)) | ---------KPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFE------SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMPQTKEHAFLARTLGIKHIIVTINKMDMVNYDQKVFEKVKAQVEKLLKTLGY-KDFPVIPTSAWNGDNVVKKSDKMPWYNGPTLIEALDQ-IPEPEKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVG---DVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WY9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129485 for 2988 contacts (-43.3/contact) +
2D Compatibility (PS) -40375 + (NN) -12951 + (LL) 1564
1D Compatibility (HY) -27200 + (ID) 7650
Total energy: -216097.0 ( -72.32 by residue)
QMean score : 0.410
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