Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGE----HGSTFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRLADLIGDGAVA-LRGLGWWADVDIERALAIGTDMSMRLADRGVLLKDTYGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
1QJ3 Chain:B ((242-411))
LIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG-GCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAA-LQKFFVEQGVWIR-PFGKLIYLMPPYIILPQQLQ---------------
General information:
TITO was launched using:
RESULT:
Template:
1QJ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85530 for 1041 contacts (-82.2/contact) +
2D Compatibility (PS) -17230 + (NN) -5316 + (LL) 1268
1D Compatibility (HY) -12000 + (ID) 2800
Total energy: -121608.0 ( -116.82 by residue)
QMean score : 0.111
(partial model without unconserved sides chains):
PDB file :
Tito_1QJ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QJ3-query.scw
PDB file :
Tito_Scwrl_1QJ3.pdb
: