Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPAPSPDARAVVTGASQNIGAALATELAARGHHLIVTARREDVLTELAARLADKYRVTVDVRPADLADPQERSKLADELAAR--PISILCANAGTATFGPIASLDLAGEKTQVQLNAVAVHDLTLAVLP--GMIERKAGGILISGSAAGNSPIPYNATYAATKAFVNTFSESLRGELRGSGVHVTVLAPGPVRTELPDASEASLVEKLVPDFLWISTEH-----TARVSLNALERNKMRVVPGLTSKAMSVASQYAPRAIVAPIVGAFYKRLGGS
2RH4 Chain:B ((25-237))
-----------ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM-----AASVREHYSDIWEVSTEEAFDRITARV-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RH4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120192 for 1639 contacts (-73.3/contact) +
2D Compatibility (PS) -22072 + (NN) -10680 + (LL) 3504
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -164140.0 ( -100.15 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_2RH4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RH4-query.scw
PDB file :
Tito_Scwrl_2RH4.pdb
: