Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVVGDVDVEAGGAA-ADEL--SGLFVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGISPPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAGKGSIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKNPERAARRMVHVPLGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
4I08 Chain:A ((10-248))
-------LEGKVALVTGASRGIGKAIAELLAERGAK-VIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGIT--RDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNA-GQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDM-------NDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGM--------
General information:
TITO was launched using:
RESULT:
Template:
4I08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128370 for 1988 contacts (-64.6/contact) +
2D Compatibility (PS) -25414 + (NN) -11434 + (LL) 2060
1D Compatibility (HY) -16000 + (ID) 4250
Total energy: -183408.0 ( -92.26 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4I08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I08-query.scw
PDB file :
Tito_Scwrl_4I08.pdb
: