Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTARPLSELVERGWAAALEP------VADQVAHMGQFLRAEIAAGRRYLPAGSNVLRAFT-FPFDNVRVLIVGQDPYPTPGHAVGLSFSVAPDVRPWPRSLANIFDEYTADL-GYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRG-KGWEAVTECAIRALAARA-APLVAILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP
3CXM Chain:A ((34-261))
-------LITNPEWRDFLAPITADSWRKGAFIRIERFLDEEKEKGRVILPPAADIFNAFNSCPFRGLKVVLLGQDPYHDLHQAHGLCFSVL-PEVPLPPSLRNIYKELTTDIAGFQAPKHGYLQSWSEQGMLMLNATLTVEAHKANSHSKTSGWAAFTDAVIQHLSQHHPNRLVFLLWGGYAQQKKRLIDANRHVVLENVHPSPLSANRGWFGCRCFSACNEALQRMSHLPMHWQL-
General information:
TITO was launched using:
RESULT:
Template:
3CXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124642 for 1731 contacts (-72.0/contact) +
2D Compatibility (PS) -23668 + (NN) -14357 + (LL) 232
1D Compatibility (HY) -19200 + (ID) 4300
Total energy: -185935.0 ( -107.41 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_3CXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CXM-query.scw
PDB file :
Tito_Scwrl_3CXM.pdb
: