Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQIL--GHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
1VPA Chain:A ((13-228))
------MNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEK-FSPSYVLVHDSARPFLRKKHVSEVLRRAR-ETGAATLALKNSDALVRVEN-D-RIEYIPRKGVYRILTPQAFSYEILKKAHEN------GGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR-
General information:
TITO was launched using:
RESULT:
Template:
1VPA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158008 for 1774 contacts (-89.1/contact) +
2D Compatibility (PS) -23964 + (NN) -14602 + (LL) 428
1D Compatibility (HY) -12800 + (ID) 3650
Total energy: -212596.0 ( -119.84 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1VPA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPA-query.scw
PDB file :
Tito_Scwrl_1VPA.pdb
: