Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDITQAAIVTGASRGIGRAIARRLAADGFAVAVNYASNQAMADEVVAEIVAAGGAAIAVQGDVASAEDMDKLFEATRGAFGRIDVVVNSAGTM-PYLKIADGDLEGFDRVIRTNLRGAFIVLGLAARHV--ERGGRIIAL-STSVIARALPS---YGPYIASKSGVEGLVHVLANELRGQDIRVNAVAPGPVATELFFNGKSAEQIDQIARLAPLERLGEPDEIAAAVSFLAGPDGAWVNSQVLRVNGGFA
4JIG Chain:A ((16-260))
-----KAVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAELTAQAVRDAGGRACIVAGDVANEADVVAMFDTVAAAFGRLDALVNNAGIVAPSMPLADMPVDRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIET-------------RLGAQTPLGRAGEAQEVAEAIVWLLGDTASYTTGALLDVGGGR-
General information:
TITO was launched using:
RESULT:
Template:
4JIG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137649 for 1960 contacts (-70.2/contact) +
2D Compatibility (PS) -24211 + (NN) -5795 + (LL) 1204
1D Compatibility (HY) -13600 + (ID) 4650
Total energy: -184701.0 ( -94.24 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_4JIG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JIG-query.scw
PDB file :
Tito_Scwrl_4JIG.pdb
: