Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSAEEIQRMSVAGALTAKVLEALDEVVRPGISTAEIDRFCERYIVDTLAAIPGSKGQYGYPFTVNTSVNEVVCHGWPSAQQILRDGDIVNVDVTVIKDGYFGDSSKMYRVGAIDRQAQKLLDVTRECLYRAIRVVRPDATLGDIGHAIQSHAEANGYSVVREYCGHGIGRKMHEAPQVLHFGRAGAGARLKAGMTFTIEPMINQGGHAVKLHKDGWTVTTRDRRLSAQYEHTVLVTERGCRVLTLRDEEREALADLAG
4U6Z Chain:A ((52-294))
---SSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACI-ARNCYPSPLNYYNFPKSCCTSVNEVICHGIPD-RRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLMHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRR------------
General information:
TITO was launched using:
RESULT:
Template:
4U6Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139360 for 2153 contacts (-64.7/contact) +
2D Compatibility (PS) -26691 + (NN) -10635 + (LL) 1416
1D Compatibility (HY) -19200 + (ID) 5500
Total energy: -199970.0 ( -92.88 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_4U6Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U6Z-query.scw
PDB file :
Tito_Scwrl_4U6Z.pdb
: