Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKML---DVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEI--ICAERKL
3D04 Chain:E ((14-159))
---IEHILQILPHRYPMLLVDRITELQ-ANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE-
General information:
TITO was launched using:
RESULT:
Template:
3D04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117821 for 1045 contacts (-112.7/contact) +
2D Compatibility (PS) -15207 + (NN) -5674 + (LL) 720
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -158332.0 ( -151.51 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_3D04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D04-query.scw
PDB file :
Tito_Scwrl_3D04.pdb
: